Mash
Mash is a multifaceted software tool developed for top-down proteomics, enabling the identification, quantification, and characterization of proteoforms with visual validation. Mash Suite Pro uses two deconvolution algorithms to optimize protein identification results from high-resolution MS and tandem MS data. It also facilitates the characterization of PTMs and sequence variations and the relative quantitation of multiple proteoforms in different experimental conditions. The software also provides visualization components for validation and correction of computational outputs, simplifying and speeding up the interpretation of high-resolution top-down proteomics data. Mash Suite Pro is envisioned to play an integral role in advancing the burgeoning field of top-down proteomics.
Topic
Genomics;Metagenomics;Statistics and probability;Sequence analysis;DNA mutation
Detail
Operation: Sequence distance matrix generation
Software interface: Command-line user interface
Language: C++
License: MIT License, Public domain, Common Public License, other
Cost: Free
Version name: v2.3
Credit: NIH, American Heart Association Scientist Development Grant, the Wisconsin Partnership Fund for the establishment of the Human Proteomics Program Mass Spectrometry Facility.
Input: -
Output: -
Contact: adam.phillippy@nih.gov
Collection: -
Maturity: Stable
Publications
- MASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics.
- Cai W, et al. MASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics. MASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics. 2016; 15:703-14. doi: 10.1074/mcp.O115.054387
- https://doi.org/10.1074/mcp.O115.054387
- PMID: 26598644
- PMC: PMC4739683
- Mash: fast genome and metagenome distance estimation using MinHash.
- Ondov BD, et al. Mash: fast genome and metagenome distance estimation using MinHash. Mash: fast genome and metagenome distance estimation using MinHash. 2016; 17:132. doi: 10.1186/s13059-016-0997-x
- https://doi.org/10.1186/s13059-016-0997-x
- PMID: 27323842
- PMC: PMC4915045
Download and documentation
Documentation: http://mash.readthedocs.org/
Home page: https://github.com/marbl/mash
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