MetaComp

MetaComp is a software tool to analyze and visualize meta-omics data: metagenomics, metatranscriptomics, metaproteomics, and metabolomics. The MetaComp algorithm includes principal component analysis (PCA), k-means clustering, hierarchical methods, multivariate statistics, two-sample hypothesis testing, multi-sample, and a function-regression analysis of environmental factors to disentangle an environment influence from the microbiota. Also, MetaComp can automatically slect the most appropriate testing method based on the input data features.

Topic

Metagenomics;Statistics and probability;Data visualisation

Detail

  • Operation: Multiple sample visualisation;Nucleic acid sequence analysis

  • Software interface: Graphical user interface

  • Language: R

  • License: -

  • Cost: Free

  • Version name: 1.1

  • Credit: The National Key Research and Development Program of China, the National Natural Science Foundation of China, Peking University.

  • Input: BLAST, HMMscan, IMG/M, MG-RAST, MZmine, Kraken, PhymmBL, APM, BIOM.

  • Output: -

  • Contact: ylsrommel@gmail.com, Prof. Huaiqiu Zhu hqzhu@pku.edu.cn, Peng Zhai zhaipeng2006@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics.
  • Zhai P, Yang L, Guo X, Wang Z, Guo J, Wang X, Zhu H. MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics. BMC Bioinformatics. 2017 Oct 2;18(1):434. doi: 10.1186/s12859-017-1849-8. PMID: 28969605; PMCID: PMC5625784.
  • https://doi.org/10.1186/s12859-017-1849-8
  • PMID: 28969605
  • PMC: PMC5625784

Download and documentation

< Back to DB search