MetaCrop

MetaCrop is a web-based, manually curated database that consolidates various data of metabolic pathways in crop plants and facilitates the creation of detailed metabolic models. The MetaCrop database furnishes varied levels of map views from primary metabolism to kinetic data of enzymes.

Topic

Endocrinology and metabolism;Plant biology;Molecular interactions, pathways and networks;Database management;Enzymes

Detail

  • Operation: Database comparison;Metabolic network modelling;Metabolic labeling;ID mapping;Mapping

  • Software interface: Database portal

  • Language: ;Database that summarizes diverse information about metabolic pathways in crop plants and allows automatic export of information for the creation of detailed metabolic models.;Database portal;Java

  • License: -

  • Cost: Free

  • Version name: 2.0

  • Credit: German Federal Ministry of Education and Research, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben.

  • Input: -

  • Output: -

  • Contact: schreibe@ipk-gatersleben.de

  • Collection: -

  • Maturity: -

Publications

  • MetaCrop: a detailed database of crop plant metabolism.
  • Grafahrend-Belau E, Weise S, Koschützki D, Scholz U, Junker BH, Schreiber F. MetaCrop: a detailed database of crop plant metabolism. Nucleic Acids Res. 2008 Jan;36(Database issue):D954-8.
  • https://doi.org/10.1093/nar/gkm835
  • PMID: 17933764
  • PMC: PMC2238923
  • MetaCrop 2.0: managing and exploring information about crop plant metabolism.
  • Schreiber F, Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Junker A, Junker BH, Klapperstück M, Scholz U, Weise S. MetaCrop 2.0: managing and exploring information about crop plant metabolism. Nucleic Acids Res. 2012 Jan;40(Database issue):D1173-7.
  • https://doi.org/10.1093/nar/gkr1004
  • PMID: 22086948
  • PMC: PMC3245004
  • Novel developments of the MetaCrop information system for facilitating systems biological approaches
  • Hippe K, Colmsee C, Czauderna T, Grafahrend-Belau E, Junker BH, Klukas C, Scholz U, Schreiber F, Weise S. Novel developments of the MetaCrop information system for facilitating systems biological approaches. J Integr Bioinform. 2010 Mar 25;7(3).
  • https://doi.org/10.2390/biecoll-jib-2010-125
  • PMID: 20375443
  • PMC: -

Download and documentation


< Back to DB search