MetaCycle
MetaCycle is an R tool to detect and evaluate periodicity in large-scale data sets. The MetaCycle algorithm can analyze two-dimensional and three-dimensional time-series data.
Topic
WorkflowsMedical informaticsBioinformaticsProteomics
Detail
Operation: Phasing Essential dynamics Visualisation
Software interface: Command-line user interface
Language: R
License: GNU GENERAL PUBLIC LICENSE Version 2 or 3
Cost: Free
Version name: 1.2.0
Credit: The National Institute of Neurological Disorders and Stroke, the Defence Advanced Research Projects Agency.
Input: -
Output: -
Contact: Gang Wu wggucas at gmail.com, John B Hogenesch hogenesch@gmail.com
Collection: -
Maturity: Stable
Publications
- MetaCycle: an integrated R package to evaluate periodicity in large scale data.
- Wu G, Anafi RC, Hughes ME, Kornacker K, Hogenesch JB. MetaCycle: an integrated R package to evaluate periodicity in large scale data. Bioinformatics. 2016 Nov 1;32(21):3351-3353. doi: 10.1093/bioinformatics/btw405. Epub 2016 Jul 4. PMID: 27378304; PMCID: PMC5079475.
- https://doi.org/10.1093/bioinformatics/btw405
- PMID: 27378304
- PMC: PMC5079475
Download and documentation
Source: https://cran.r-project.org/src/contrib/MetaCycle_1.2.0.tar.gz
Documentation: https://cran.r-project.org/web/packages/MetaCycle/MetaCycle.pdf
Home page: https://github.com/gangwug/MetaCycle
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