MetaShot

MetaShot (Metagenomics Shotgun) is a workflow tool to classify taxons in human metagenomic data.

Topic

Microbial ecology;Taxonomy;Metagenomics

Detail

  • Operation: Taxonomic classification

  • Software interface: Command-line user interface

  • Language: Python

  • License: GNU General Public License v3.0

  • Cost: Free

  • Version name: -

  • Credit: MIUR-Italy, CNR Aging and Medicina Personalizzata programs, JPI Project ENPADASI, INMARE, EMBRIC, ELIXIR-EXCELERATE, Spanish Ministry of Economy and Competitiveness and European Regional Development Fund , the Italian Ministry of Health.

  • Input: -

  • Output: -

  • Contact: Graziano Pesole graziano.pesole@uniba.it

  • Collection: -

  • Maturity: -

Publications

  • MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data.
  • Fosso B, Santamaria M, D'Antonio M, Lovero D, Corrado G, Vizza E, Passaro N, Garbuglia AR, Capobianchi MR, Crescenzi M, Valiente G, Pesole G. MetaShot: an accurate workflow for taxon classification of host-associated microbiome from shotgun metagenomic data. Bioinformatics. 2017 Jun 1;33(11):1730-1732. doi: 10.1093/bioinformatics/btx036. PMID: 28130230; PMCID: PMC5447231.
  • https://doi.org/10.1093/bioinformatics/btx036
  • PMID: 28130230
  • PMC: PMC5447231

Download and documentation

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