MineICA
MineICA is a user-friendly software tool that enables feature extraction from large-scale gene expression data. This tool uses two feature extraction techniques - Principal Component Analysis (PCA) and Independent Component Analysis (ICA) - to transform the data into a reduced representation set of genes.
The primary goal of feature extraction is to identify the most relevant genes that can extract valuable information from large-scale gene expression data. By selecting the most informative genes, the gene set created by MineICA can be used for further analysis instead of the full-size data, which can be time-consuming and computationally expensive.
One of the key advantages of MineICA is that it provides a highly efficient way to analyze large-scale gene expression data. MineICA can reduce the data size by performing feature extraction without losing important information. This is a significant benefit because it enables researchers to identify patterns and correlations in the data that might otherwise be difficult to detect.
Topic
Transcriptomics;Gene transcripts;Gene expression
Detail
Operation: Analysis
Software interface: Command-line user interface;Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 1.40.0
Credit: Universiti Teknologi Malaysia.
Input: -
Output: -
Contact: Anne Biton anne.biton@gmail.com
Collection: BioConductor
Maturity: Stable
Publications
- A review of feature extraction software for microarray gene expression data.
- Tan CS, et al. A review of feature extraction software for microarray gene expression data. A review of feature extraction software for microarray gene expression data. 2014; 2014:213656. doi: 10.1155/2014/213656
- https://doi.org/10.1155/2014/213656
- PMID: 25250315
- PMC: PMC4164313
Download and documentation
Source: http://bioconductor.org/packages/release/bioc/src/contrib/MineICA_1.40.0.tar.gz
Documentation: http://bioconductor.org/packages/release/bioc/manuals/MineICA/man/MineICA.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/MineICA.html
Links: http://bioconductor.org/packages/release/bioc/vignettes/MineICA/inst/doc/MineICA.pdf
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