MulRF
MulRF is a software package for phylogenetic analysis using multi-copy gene trees. It seeks the species tree that minimizes the Robinson-Foulds (RF) distance to the input trees using a generalization of the RF distance to multi-labeled trees. It is useful for inferring phylogenies from large collections of gene trees, and it provides a user-friendly graphical user interface with tree visualization.
Topic
Phylogenetics;Evolutionary biology;Genetics
Detail
Operation: Phylogenetic tree generation
Software interface: Graphical user interface
Language: Java;C++
License: Apache License 2.0
Cost: Free
Version name: 1.2
Credit: The National Science Foundation
Input: ASCII, Newick
Output: species tre
Contact: Ruchi Chaudhary ruchic@ufl.edu
Collection: -
Maturity: -
Publications
- MulRF: a software package for phylogenetic analysis using multi-copy gene trees.
- Chaudhary R, et al. MulRF: a software package for phylogenetic analysis using multi-copy gene trees. MulRF: a software package for phylogenetic analysis using multi-copy gene trees. 2015; 31:432-3. doi: 10.1093/bioinformatics/btu648
- https://doi.org/10.1093/bioinformatics/btu648
- PMID: 25273112
- PMC: -
Download and documentation
Source: https://iastate.box.com/s/1vwbs2nl622vpthgyifzf8kcj1eu9kgv
Documentation: https://iastate.app.box.com/s/jt3jxjeueyqkvrw14c7a9r9bxjyjiccw
Home page: http://genome.cs.iastate.edu/CBL/MulRF/
< Back to DB search