NAViGaTOR

The tool 'NAViGaTOR' is a graphing application designed for the visualization of biological networks in both 2D and 3D. It has a rich suite of visual mark-up tools for manual and automated annotation, and fast and scalable layout algorithms with OpenGL hardware acceleration for large graphs. NAViGaTOR supports community-developed data formats and is platform-independent and extensible through a plug-in architecture. It is freely available to the research community with installers and documentation provided for multiple operating systems.

Topic

Molecular interactions, pathways and networks;Imaging;Protein interactions;Database management;Software engineering

Detail

  • Operation: Protein interaction network analysis;Clustering profile plotting;Pathway or network analysis;Visualisation;Pathway or network visualisation

  • Software interface: Web user interface

  • Language: Java

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 3.0

  • Credit: Genome Canada via the Ontario Genomics Institute, Canada Foundation for Innovation, Canada Research Chair Program, Ontario Research Fund Research Excellence.

  • Input: -

  • Output: -

  • Contact: navigator@cs.utoronto.ca

  • Collection: -

  • Maturity: Mature

Publications

  • NAViGaTOR: Network Analysis, Visualization and Graphing Toronto.
  • Brown KR, et al. NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. 2009; 25:3327-9. doi: 10.1093/bioinformatics/btp595
  • https://doi.org/10.1093/bioinformatics/btp595
  • PMID: 19837718
  • PMC: PMC2788933

Download and documentation

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