NCBI GEO

NCBI GEO is a web-based service providing a public repository of high-throughput functional genomics data, such as microarray and next-generation sequencing data. The research community can submit their data. NCBI GEO organizes the records by platform, samples, series, datasets, and profiles.

Topic

Gene expression;Microarray experiment;Database management;Experimental design and studies;Probes and primers

Detail

  • Operation: Deposition;Gene expression clustering;Gene expression profiling;Gene expression analysis

  • Software interface: Database portal

  • Language: -

  • License: ODbL-1.0

  • Cost: Free

  • Version name: -

  • Credit: The Intramural Research Program of the National Institutes of Health, National Library of Medicine.

  • Input: -

  • Output: -

  • Contact: barrett@ncbi.nlm.nih.gov

  • Collection: -

  • Maturity: -

Publications

  • NCBI GEO: mining tens of millions of expression profiles--database and tools update.
  • Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R. NCBI GEO: mining tens of millions of expression profiles--database and tools update. Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5.
  • https://doi.org/10.1093/nar/gkl887
  • PMID: 17099226
  • PMC: PMC1669752
  • NCBI GEO: archive for high-throughput functional genomic data.
  • Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Edgar R. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res. 2009 Jan;37(Database issue):D885-90.
  • https://doi.org/10.1093/nar/gkn764
  • PMID: 18940857
  • PMC: PMC2686538
  • NCBI GEO: archive for functional genomics data sets--10 years on.
  • Barrett T, Troup DB, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Holko M, Ayanbule O, Yefanov A, Soboleva A. NCBI GEO: archive for functional genomics data sets--10 years on. Nucleic Acids Res. 2011 Jan;39(Database issue):D1005-10.
  • https://doi.org/10.1093/nar/gkq1184
  • PMID: 21097893
  • PMC: PMC3013736
  • NCBI GEO: archive for functional genomics data sets--update.
  • Barrett T, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M, Yefanov A, Lee H, Zhang N, Robertson CL, Serova N, Davis S, Soboleva A. NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res. 2013 Jan;41(Database issue):D991-5.
  • https://doi.org/10.1093/nar/gks1193
  • PMID: 23193258
  • PMC: PMC3531084

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