NEAT

NEAT is an R tool for testing gene network enrichment analysis. The NEAT algorithm uses hypergeometric distribution as the basis of the tests and works on undirected and partially directed networks.

Topic

Molecular interactions, pathways and networks;Gene expression;Genetics

Detail

  • Operation: Enrichment analysis

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.2.3

  • Credit: Advanced Swiss National Foundation Fellowship, the National Institute of General Medical Sciences (US).

  • Input: -

  • Output: -

  • Contact: Mirko Signorelli m.signorelli@lumc.nl, Ernst C. Wit e.c.wit@rug.nl

  • Collection: -

  • Maturity: -

Publications

  • NEAT: an efficient network enrichment analysis test
  • Signorelli M, Vinciotti V, Wit EC. NEAT: an efficient network enrichment analysis test. BMC Bioinformatics. 2016 Sep 5;17(1):352. doi: 10.1186/s12859-016-1203-6. PMID: 27597310; PMCID: PMC5011912.
  • https://doi.org/10.1186/s12859-016-1203-6
  • PMID: 27597310
  • PMC: PMC5011912

Download and documentation

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