NGS-SNP
NGS-SNP is a software tool that consists of scripts to annotate previously identified single nucleotide polymorphisms (SNPs), having reference sequences in Ensembl.
Topic
Sequence analysis;Protein variants
Detail
Operation: Sequence annotation;Genetic variation analysis
Software interface: Command-line user interface
Language: Perl
License: -
Cost: Free
Version name: -
Credit: Alberta Livestock and Meat Agency; the Natural Sciences and Engineering Research Council of Canada.
Input: -
Output: -
Contact: stothard@ualberta.ca
Collection: -
Maturity: -
Publications
- In-depth annotation of SNPs arising from resequencing projects using NGS-SNP.
- Grant JR, Arantes AS, Liao X, Stothard P. In-depth annotation of SNPs arising from resequencing projects using NGS-SNP. Bioinformatics. 2011 Aug 15;27(16):2300-1.
- https://doi.org/10.1093/bioinformatics/btr372
- PMID: 21697123
- PMC: PMC3150039
Download and documentation
Currently not available or not maintained.
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