NMRFAM-SPARKY

NMRFAM-SPARKY, the successor to SPARKY 3, is the most widely used NMR data analysis software. It has been repackaged with up-to-date Python and Tcl/Tk versions and is equipped with new tools for peak simulation and graphical assignment determination. These tools, combined with PACSY database chemical shift predictions, significantly speed up protein side chain assignments. NMRFAM-SPARKY can connect with web servers such as PECAN, PINE, TALOS-N, CS-Rosetta, SHIFTX2, and PONDEROSA-C/S through automated data format conversion.

Topic

NMR;Proteins;Proteomics experiment

Detail

  • Operation: Peak detection

  • Software interface: Command-line user interface, web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: Build 04/22/21

  • Credit: United States National Institutes of Health NIH.

  • Input: FASTA

  • Output: -

  • Contact: Woonghee Lee whlee@nmrfam.wisc.edu

  • Collection: -

  • Maturity: Stable

Publications

  • NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.
  • Lee W, et al. NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. 2015; 31:1325-7. doi: 10.1093/bioinformatics/btu830
  • https://doi.org/10.1093/BIOINFORMATICS/BTU830
  • PMID: 25505092
  • PMC: PMC4393527

Download and documentation

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