NemaFootPrinter

NemaFootPrinter is a web-based software tool designed to identify conserved, non-exonic DNA segments in the genomes of C. elegans and C. briggsae, allowing the detection of putative transcription factor binding sites. The software uses automated identification of orthologous gene pairs, pairwise sequence comparison, and a range of different methods to identify significant sequence similarities. The investigator can select sub-sequences of the two gene regions through an interactive graphical user interface, and the software automatically masks exons.

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Detail

  • Operation: -

  • Software interface: -

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  • License: -

  • Cost: Free

  • Version name: -

  • Credit: AIRC (Italian Association for Cancer Research) fellowship in the framework of the AIRC Bioinformatic Center Grant (BICG), FIRC (Italian Foundation for Cancer Research).

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  • Contact: Davide Rambaldi davide.rambaldi@ifom-ieo-campus.it, Alessandro Guffanti alessandro.guffanti@ifom-ieo-campus.it, Paolo Morandi paolo.morandi@ifom-ieo-campus.it, Giuseppe Cassata giuseppe.cassata@ifom-ieo-campus.it

  • Collection: -

  • Maturity: Stable

Publications

  • NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.
  • Rambaldi D, et al. NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae. NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae. 2005; 6 Suppl 4:S22. doi: 10.1186/1471-2105-6-S4-S22
  • https://doi.org/10.1186/1471-2105-6-S4-S22
  • PMID: 16351749
  • PMC: PMC1866385

Download and documentation

    Currently not available or not maintained.

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