NetMatch

NetMatch is a Cytoscape plugin that allows users to search biological networks for subcomponents matching a given query. Queries can be approximate, and a drawing tool is provided to simplify the query creation process. NetMatch is available as a full package with a tutorial and examples on the web.

Topic

Molecular interactions, pathways and networks;Bioinformatics;Database management;Systems biology;Software engineering

Detail

  • Operation: Database search;Pathway or network analysis;Network simulation;Query and retrieval;Weighted correlation network analysis

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: 1.0.1

  • Credit: MIUR

  • Input: -

  • Output: -

  • Contact: D. Shasha shasha@cs.nyu.edu, G. D. Bader gary.bader@utoronto.ca

  • Collection: -

  • Maturity: -

Publications

  • NetMatch: a Cytoscape plugin for searching biological networks.
  • Ferro A, et al. NetMatch: a Cytoscape plugin for searching biological networks. NetMatch: a Cytoscape plugin for searching biological networks. 2007; 23:910-2. doi: 10.1093/bioinformatics/btm032
  • https://doi.org/10.1093/bioinformatics/btm032
  • PMID: 17277332
  • PMC: -

Download and documentation

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