NetMatchStar
NetMatchStar is a Cytoscape app that allows users to find all instances of a query graph in a network and determine its significance as a motif using seven different random models. The app improves upon the previous NetMatch tool with enhanced style, performance, and functionality, including the ability to use wildcards in queries. Users can upload their query or build it from scratch using Cytoscape tools.
Topic
Molecular interactions, pathways and networks;Transcription factors and regulatory sites
Detail
Operation: Metabolic network modelling;Query and retrieval
Software interface: Library
Language: Java
License: CC-BY-NC-SA-3.0
Cost: Free
Version name: 3.2
Credit: ProgrammaOperativoFondoEuropeo per lo SviluppoRegionale, Linea di intervento 4.1.1.2.
Input: -
Output: -
Contact: giugno@dmi.unict.it
Collection: -
Maturity: -
Publications
- NetMatchStar: an enhanced Cytoscape network querying app.
- Rinnone F, et al. NetMatchStar: an enhanced Cytoscape network querying app. NetMatchStar: an enhanced Cytoscape network querying app. 2015; 4:479. doi: 10.12688/f1000research.6656.2
- https://doi.org/10.12688/f1000research.6656.2
- PMID: 26594341
- PMC: PMC4642848
Download and documentation
Source: https://alpha.dmi.unict.it/netmatchstar/files/netmatchstar-3.2.jar
Documentation: https://alpha.dmi.unict.it/netmatchstar/netmatchstar.html#introduction
Home page: https://alpha.dmi.unict.it/netmatchstar/netmatchstar.html
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