NetVenn

NetVenn is a web-based tool to compare and analyze gene lists using a combination of Venn diagrams and gene set enrichment. NetVenn includes a Venn diagram view of gene lists, annotation of gene lists, mapping of differentially expressed genes, a power graph analysis, and protein interaction networks.

Topic

Molecular interactions, pathways and networks;Gene expression;Mapping;Gene transcripts;Database management

Detail

  • Operation: Gene regulatory network analysis;Differential gene expression analysis;Gene expression correlation;Gene expression analysis

  • Software interface: Web user interface

  • Language: Queries to the server are implemented as web services written in PHP and JavaScript.

  • License: Public domain

  • Cost: Free

  • Version name: -

  • Credit: U.S. National Science Foundatio, United State Department of Agriculture, Agriculture Research Service CRIS project, USDA-Agriculture Research Service CRIS project.

  • Input: -

  • Output: -

  • Contact: Yi Wang Yi.Wang@ars.usda.gov, Yong Q. Gu Yong.Gu@ars.usda.gov

  • Collection: -

  • Maturity: Mature

Publications

  • NetVenn: an integrated network analysis web platform for gene lists.
  • Wang Y, Thilmony R, Gu YQ. NetVenn: an integrated network analysis web platform for gene lists. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W161-6. doi: 10.1093/nar/gku331. Epub 2014 Apr 25. PMID: 24771340; PMCID: PMC4086115.
  • https://doi.org/10.1093/nar/gku331
  • PMID: 24771340
  • PMC: PMC4086115

Download and documentation

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