OCSVM

The software tool OCSVM (One-class Classification Support Vector Machines) is used to identify disease-causing genes, a crucial step in drug design and discovery. Unlike traditional machine learning methods that use known disease genes as positive samples and unknown genes as negative samples to build a binary classification model, OCSVM focuses on creating a model that concentrates on detecting known disease-causing genes to increase sensitivity and precision.

The authors propose using OCSVM to tackle the problem of disease gene identification as a one-class classification problem. The main goal is to identify disease genes while identifying non-disease genes is of less or no significance. They evaluate the performance of their proposed model using a benchmark dataset consisting of gene expression data for Acute Myeloid Leukemia (AML) cancer.

Topic

Drug discovery;Machine learning;Pathology;Oncology;Gene expression

Detail

  • Operation: Gene prediction;Expression profile comparison

  • Software interface: Command-line interface

  • Language: MATLAB

  • License: Not stated

  • Cost: Free of charge

  • Version name: -

  • Credit: National Institute of General Medical Sciences of the National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: Abdollah Dehzangi abdollah.dehzangi@morgan.edu

  • Collection: -

  • Maturity: -

Publications

  • A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer.
  • Vasighizaker A, et al. A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer. A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer. 2019; 14:e0226115. doi: 10.1371/journal.pone.0226115
  • https://doi.org/10.1371/JOURNAL.PONE.0226115
  • PMID: 31825992
  • PMC: PMC6905554

Download and documentation


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