OCSVM
The software tool OCSVM (One-class Classification Support Vector Machines) is used to identify disease-causing genes, a crucial step in drug design and discovery. Unlike traditional machine learning methods that use known disease genes as positive samples and unknown genes as negative samples to build a binary classification model, OCSVM focuses on creating a model that concentrates on detecting known disease-causing genes to increase sensitivity and precision.
The authors propose using OCSVM to tackle the problem of disease gene identification as a one-class classification problem. The main goal is to identify disease genes while identifying non-disease genes is of less or no significance. They evaluate the performance of their proposed model using a benchmark dataset consisting of gene expression data for Acute Myeloid Leukemia (AML) cancer.
Topic
Drug discovery;Machine learning;Pathology;Oncology;Gene expression
Detail
Operation: Gene prediction;Expression profile comparison
Software interface: Command-line interface
Language: MATLAB
License: Not stated
Cost: Free of charge
Version name: -
Credit: National Institute of General Medical Sciences of the National Institutes of Health.
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Output: -
Contact: Abdollah Dehzangi abdollah.dehzangi@morgan.edu
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Maturity: -
Publications
- A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer.
- Vasighizaker A, et al. A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer. A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer. 2019; 14:e0226115. doi: 10.1371/journal.pone.0226115
- https://doi.org/10.1371/JOURNAL.PONE.0226115
- PMID: 31825992
- PMC: PMC6905554
Download and documentation
Documentation: --
Home page: https://github.com/imandehzangi/OCSVM
Links: https://github.com/imandehzangi/OCSVM/blob/master/Supplementary%20Material.pdf
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