OTUbase

OTUbase is an R package that enables the analysis of operational taxonomic unit (OTU) data and sequence classification data. The software organizes the output data from existing programs that cluster and classify sequence data, into easily accessible formats that can be manipulated using R libraries.

Topic

Taxonomy;Data architecture, analysis and design

Detail

  • Operation: Visualisation

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: Artistic-2.0

  • Cost: Free

  • Version name: 1.48.0

  • Credit: Bioinformatics facilities, National Institutes of Health-National Center for Research Resources.

  • Input: -

  • Output: -

  • Contact: Daniel Beck danlbek@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • OTUbase: an R infrastructure package for operational taxonomic unit data.
  • Beck D, et al. OTUbase: an R infrastructure package for operational taxonomic unit data. OTUbase: an R infrastructure package for operational taxonomic unit data. 2011; 27:1700-1. doi: 10.1093/bioinformatics/btr196
  • https://doi.org/10.1093/bioinformatics/btr196
  • PMID: 21498398
  • PMC: PMC3106189

Download and documentation

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