OmicBrowse

OmicBrowse is an open source genome browser that can maintain multiple genome annotation datasets and regulate user data access to these datasets. It allows multiple users to have their own integrative view of their unpublished and published datasets, reducing maintenance costs. OmicBrowse supports DAS1 imports and exports of annotations to Internet site servers worldwide. It also provides a data-download server that interactively selects datasets and filters the data on the selected datasets. The OmicBrowse server has been available since 2003.

Topic

Genomics

Detail

  • Operation: Genome visualisation;Genome annotation

  • Software interface: Web user interface

  • Language: Java

  • License: -

  • Cost: Free

  • Version name: 1.4

  • Credit: Special Coordination Funds of the Japanese Ministry of Education, Culture, Sports, Science and Technology, RIKEN (The Institute of Physical and Chemical Research).

  • Input: -

  • Output: -

  • Contact: Tetsuro Toyoda toyoda@base.riken.jp

  • Collection: -

  • Maturity: -

Publications

  • OmicBrowse: a Flash-based high-performance graphics interface for genomic resources.
  • Matsushima A, et al. OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. 2009; 37:W57-62. doi: 10.1093/nar/gkp404
  • https://doi.org/10.1093/nar/gkp404
  • PMID: 19528066
  • PMC: PMC2703975

Download and documentation

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