OmicCircos
OmicCircos is an R software package designed to visualize genomic variations such as mutation patterns, copy number variations, expression patterns, and methylation patterns in circular plots. It uses statistical and graphic functions in an R/Bioconductor environment to perform statistical analyses and display results using various formats such as cluster, boxplot, histogram, and heatmap. It offers unique features such as independent track drawing, zoom functions, link-polygons, and position-independent heatmaps. OmicCircos is available through Bioconductor and is open source under the Artistic-2.0 license.
Topic
Omics;Data visualisation
Detail
Operation: Genome visualisation;Visualisation;Genome annotation
Software interface: Command-line user interface;Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 1.36.0
Credit: -
Input: -
Output: -
Contact: yhu@mail.nih.gov
Collection: -
Maturity: Mature
Publications
- OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data.
- Hu Y, et al. OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data. OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data. 2014; 13:13-20. doi: 10.4137/CIN.S13495
- https://doi.org/10.4137/cin.s13495
- PMID: 24526832
- PMC: PMC3921174
Download and documentation
Source: http://bioconductor.org/packages/release/bioc/src/contrib/OmicCircos_1.36.0.tar.gz
Documentation: http://bioconductor.org/packages/release/bioc/manuals/OmicCircos/man/OmicCircos.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/OmicCircos.html
Links: http://bioconductor.org/packages/release/bioc/vignettes/OmicCircos/inst/doc/OmicCircos_vignette.pdf
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