OpenStats

The 'OpenStats' software tool is for the reproducible statistical analysis of data from high-throughput phenotyping screens. It addresses challenges related to scalability and extensibility in statistical analysis software, providing a robust foundation for modeling various statistical scenarios. Its reduced complexity enhances transparency and facilitates FAIR (Findable, Accessible, Interoperable, and Reusable) data analysis.

Topic

Genotype and phenotype;Workflows;Statistics and probability

Detail

  • Operation: Genotyping;Standardisation and normalisation;Statistical modelling

  • Software interface: Library

  • Language: R

  • License: GNU General Public License, version 2

  • Cost: Free

  • Version name: 1.14.0

  • Credit: NIH Common Fund, the European Molecular Biology Laboratory core funding, the National Human Genome Research Institute of the National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: Hamed Haseli Mashhadi hamedhm@ebi.ac.uk

  • Collection: -

  • Maturity: Stable

Publications

  • OpenStats: A Robust and Scalable Software Package for Reproducible Analysis of High-Throughput Phenotypic Data
  • Haselimashhadi H, Mason JC, Mallon AM, Smedley D, Meehan TF, Parkinson H. OpenStats: A robust and scalable software package for reproducible analysis of high-throughput phenotypic data. PLoS One. 2020 Dec 30;15(12):e0242933. doi: 10.1371/journal.pone.0242933. PMID: 33378393; PMCID: PMC7773254.
  • https://doi.org/10.1371/journal.pone.0242933
  • PMID: 33378393
  • PMC: PMC7773254

Download and documentation

< Back to DB search