Oscope

Oscope is a tool for the identification of oscillatory genes single-cell RNA-seq data. The package has functions for searching candidate oscillatory pairs, k-medoids clustering, and to recover the base cycle order for oscillatory groups.

Topic

Gene regulation;RNA-Seq;Gene expression

Detail

  • Operation: Gene expression analysis;Statistical calculation

  • Software interface: Command-line user interface

  • Language: R

  • License: Artistic-2.0

  • Cost: Free

  • Version name: 1.17.0

  • Credit: The National Institutes of Health (NIH), the Charlotte Geyer Foundation, the Morgridge Institute for Research, the Shapiro Fellowship, the Canadian Institutes of Health Research.

  • Input: -

  • Output: -

  • Contact: Ning Leng nleng@morgridge.org | Ning Leng lengning1 at gmail.com |Christina Kendziorski kendzior@biostat.wisc.edu

  • Collection: BioConductor

  • Maturity: Stable

Publications

  • Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments.
  • Leng N, et al. Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments. Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments. 2015; 12:947-950. doi: 10.1038/nmeth.3549
  • https://doi.org/10.1038/nmeth.3549
  • PMID: 26301841
  • PMC: PMC4589503

Download and documentation

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