Oufti

Oufti is a software tool for the quantitative analysis of microscopy data. The Oufti algorithm includes functions to track touching cells in confluent samples, quantitative analysis of diffraction and non-diffraction-limited fluorescence signals, detection, and quantification of cells and fluorescence signals, interactive segmentation, and post-processing analyses.

Topic

Cell biology;Light microscopy

Detail

  • Operation: Image analysis

  • Software interface: Graphical user interface

  • Language: MATLAB

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: -

  • Credit: The National Institutes of Health, the Howard Hughes Medical Institute.

  • Input: -

  • Output: -

  • Contact: christine.jacobs-wagner@yale.edu

  • Collection: -

  • Maturity: -

Publications

  • Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis.
  • Paintdakhi A, Parry B, Campos M, Irnov I, Elf J, Surovtsev I, Jacobs-Wagner C. Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis. Mol Microbiol. 2016 Feb;99(4):767-77. doi: 10.1111/mmi.13264. Epub 2015 Dec 18. PMID: 26538279; PMCID: PMC4752901.
  • https://doi.org/10.1111/mmi.13264
  • PMID: 26538279
  • PMC: PMC4752901

Download and documentation

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