PAML

PAML is a tool package for reconstructing and fitting models of phylogenetic trees. The PAML algorithm uses the Maximum Likelihood (ML) method.

Topic

Phylogenetics;Sequence analysis

Detail

  • Operation: Probabilistic sequence generation;Phylogenetic tree generation (maximum likelihood and Bayesian methods);Phylogenetic tree analysis

  • Software interface: Command-line user interface;Graphical user interface

  • Language: C

  • License: GNU General Public License v3.0

  • Cost: Free

  • Version name: 4.10.5

  • Credit: Case Western Reserve University.

  • Input: -

  • Output: -

  • Contact: -

  • Collection: --

  • Maturity: -

Publications

  • PAML 4: phylogenetic analysis by maximum likelihood.
  • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 2007 Aug;24(8):1586-91. doi: 10.1093/molbev/msm088. Epub 2007 May 4. PMID: 17483113.
  • https://doi.org/10.1093/molbev/msm088
  • PMID: 17483113
  • PMC: -

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