PCIT

PCIT is an R tool for detecting and analyzing gene-gene associations in co-expression networks.

Topic

Molecular interactions, pathways and networks

Detail

  • Operation: Weighted correlation network analysis

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.6.0

  • Credit: Commonwealth Scientific and Industrial Research Organisation's (CSIRO) Office of the Chief Executive (OCE) Postdoctoral Fellowship program and the CSIRO's Transformational Biology Capability Platform.

  • Input: -

  • Output: -

  • Contact: Nathan S. Watson-Haigh nathan.watson-haigh@adelaide.edu.au

  • Collection: -

  • Maturity: Emerging

Publications

  • PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.
  • Watson-Haigh NS, Kadarmideen HN, Reverter A. PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches. Bioinformatics. 2010 Feb 1;26(3):411-3. doi: 10.1093/bioinformatics/btp674. Epub 2009 Dec 9. PMID: 20007253.
  • https://doi.org/10.1093/bioinformatics/btp674
  • PMID: 20007253
  • PMC: -

Download and documentation

< Back to DB search