PHYLIP

PHYLIP is a comprehensive software tool package for phylogenetic analyses. The PHYLIP package includes tools to infer evolutionary trees (phylogenies), parsimony, distance matrix, likelihood, bootstrapping, consensus trees, and discrete characters. The algorithm includes heuristic, branch, and bound tree search.

Topic

Phylogenetics;Phylogeny;Model organisms;Gene and protein families;Physiology

Detail

  • Operation: Phylogenetic tree distances calculation;Phylogenetic tree generation (maximum likelihood and Bayesian methods);Phylogenetic tree generation (parsimony methods);Phylogenetic tree analysis;Phylogenetic tree bootstrapping

  • Software interface: Web user interface

  • Language: C

  • License: BSD-3-Clause

  • Cost: -

  • Version name: 3.698

  • Credit: The United States National Institutes of Health National Institute of General Medical Sciences, the Pittsburgh Supercomputing Center National Resource for Biomedical Supercomputing funded through the United States National Institutes of Health National Center for Research Resources, the United States National Science Foundation through TeraGrid, U.S. Department of Energy, National Science Foundation, NIH NIGMS Shannon Award.

  • Input: -

  • Output: Newick

  • Contact: Joseph Felsenstein joe@gs.washington.edu

  • Collection: -

  • Maturity: Mature

Publications

  • -
  • Kaushik A, et al. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. 2015; 3:e1332. doi: 10.7717/peerj.1332
  • https://doi.org/10.1111/j.1096-0031.1989.tb00562.x
  • PMID: -
  • PMC: -

Download and documentation

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