PIMD
"PIMD" (Predictive Integration for Multi-dimensional Drug Data) is a systematic framework for predicting drug therapeutic properties and facilitating drug repositioning by integrating multi-dimensional drug data. Addressing the challenge of harnessing the vast accumulation of drug informatics data for precision repositioning, PIMD leverages drug similarity networks (DSNs) based on chemical, pharmacological, and clinical data, providing a novel approach to pharmaceutical research and development.
Key Features and Functionalities:
- Integration of Multi-Dimensional Drug Data: PIMD integrates chemical, pharmacological, and clinical data into a cohesive drug similarity network (DSN), enabling a comprehensive analysis of drug properties for repositioning purposes.
- Creation of an Integrated Drug Similarity Network (iDSN): By fusing different DSNs, PIMD creates an iDSN composed of multiple clusters, offering a systematic way to explore drug similarities and potential therapeutic applications.
- Systematic Annotation of Clusters: Beyond simple data fusion, PIMD annotates clusters within the iDSN to identify unexpected drugs and drug pairs with high similarity scores, predicting novel therapeutic uses.
- Insights into Drug Properties: The framework evaluates the universality, individuality, and complementarity of various drug properties, shedding light on the contribution of each data type to drug repositioning efforts.
Topic
Pharmacology;Drug discovery;Drug development;Informatics
Detail
Operation: Clustering
Software interface: Command-line interface
Language: R
License: Not stated
Cost: Free of charge
Version name: -
Credit: The National Natural Science Foundation of China, the Program of International Sci-Tech Cooperation, China.
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Output: -
Contact: -
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Maturity: -
Publications
- PIMD: An Integrative Approach for Drug Repositioning Using Multiple Characterization Fusion.
- He S, et al. PIMD: An Integrative Approach for Drug Repositioning Using Multiple Characterization Fusion. PIMD: An Integrative Approach for Drug Repositioning Using Multiple Characterization Fusion. 2020; 18:565-581. doi: 10.1016/j.gpb.2018.10.012
- https://doi.org/10.1016/J.GPB.2018.10.012
- PMID: 33075523
- PMC: PMC8377380
Download and documentation
Source: https://github.com/Sepstar/PIMD/
Documentation: https://github.com/Sepstar/PIMD/blob/master/README.md
Home page: https://github.com/Sepstar/PIMD/
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