PPUS

PPUS is a web server that uses support vector machines as classifiers and nucleotides around Ψ sites as features to predict PUS-specific Ψ sites. It accurately predicts new Ψ sites for PUS1, PUS4, and PUS7 in yeast and PUS4 in humans.

Topic

Functional, regulatory and non-coding RNA;Molecular interactions, pathways and networks

Detail

  • Operation: Nucleic acid feature detection

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: National Natural Science Foundation of China, the National High Technology Research and Development Program of China.

  • Input: -

  • Output: -

  • Contact: Yan-Hui Li liyanhui@bjmu.edu.cn, Qinghua Cui cuiqinghua@hsc.pku.edu.cn

  • Collection: -

  • Maturity: -

Publications

  • PPUS: a web server to predict PUS-specific pseudouridine sites.
  • Li YH, et al. PPUS: a web server to predict PUS-specific pseudouridine sites. PPUS: a web server to predict PUS-specific pseudouridine sites. 2015; 31:3362-4. doi: 10.1093/bioinformatics/btv366
  • https://doi.org/10.1093/bioinformatics/btv366
  • PMID: 26076723
  • PMC: -

Download and documentation

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