PRECOG

PRECOG (PREsentation and Characterization Of Growth-data) is a software tool developed to automate the visualization, analysis, and exploration of complex microbial growth data. It allows for quality control, evaluation, and standardized extraction of fitness components in microbial growth data. PRECOG also provides quality indices to filter out high- and low-quality growth experiments, and its pre-processing filters are computationally inexpensive yet functionally comparable to more complex neural network procedures. The tool streamlines growth data pre-processing, phenotypic trait extraction, visualization, distribution, and the creation of phenomics databases.

Topic

Phenomics;Microbiology;Data identity and mapping

Detail

  • Operation: Prediction and recognition

  • Software interface: Web API;Web application;Graphical user interface

  • Language: C#

  • License: Other

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: xferlu@gu.se

  • Collection: -

  • Maturity: -

Publications

  • PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics.
  • Fernandez-Ricaud L, et al. PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics. PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics. 2016; 17:249. doi: 10.1186/s12859-016-1134-2
  • https://doi.org/10.1186/s12859-016-1134-2
  • PMID: 27334112
  • PMC: PMC4917999

Download and documentation

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