PROMALS3D

PROMALS (Profile Multiple Alignment with Local Structure) is a web-based tool for the construction of multiple sequence alignments (MSA). It searches both sequence and structure databases and uses that information together with user-defined constraints.

Topic

Structure prediction;Protein secondary structure;Proteins;Structure analysis;Sequence analysis

Detail

  • Operation: Multiple sequence alignment;Protein secondary structure comparison;Protein secondary structure prediction

  • Software interface: Web user interface;command-line user interface

  • Language: Python

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: The National Institutes of Health (GM094575 to NVG) and the Welch Foundation (I-1505 to NVG).

  • Input: FASTA

  • Output: Clustal;HTML

  • Contact: jpei@chop.swmed.edu

  • Collection: -

  • Maturity: Mature

Publications

  • PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information.
  • Pei J and Grishin NV. PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information. PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information. 2014; 1079:263-71. doi: 10.1007/978-1-62703-646-7_17
  • https://doi.org/10.1007/978-1-62703-646-7_17
  • PMID: 24170408
  • PMC: PMC4506754
  • PROMALS3D: a tool for multiple protein sequence and structure alignments.
  • Pei J, et al. PROMALS3D: a tool for multiple protein sequence and structure alignments. PROMALS3D: a tool for multiple protein sequence and structure alignments. 2008; 36:2295-300. doi: 10.1093/nar/gkn072
  • https://doi.org/10.1093/nar/gkn072
  • PMID: 18287115
  • PMC: PMC2367709
  • PROMALS3D web server for accurate multiple protein sequence and structure alignments.
  • Pei J, et al. PROMALS3D web server for accurate multiple protein sequence and structure alignments. PROMALS3D web server for accurate multiple protein sequence and structure alignments. 2008; 36:W30-4. doi: 10.1093/nar/gkn322
  • https://doi.org/10.1093/nar/gkn322
  • PMID: 18503087
  • PMC: PMC2447800

Download and documentation

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