ParTIES

ParTIES (Paramecium Toolbox for Interspersed DNA Elimination Studies) is a Perl-based software tool designed to identify and characterize eliminated sequences in Paramecium species, which undergo developmental DNA elimination. It allows for the detection of rare elimination polymorphisms and measures the presence of eliminated sequences in a sequencing sample.

Topic

Model organisms;Sequence analysis;DNA

Detail

  • Operation: Sequence analysis

  • Software interface: Command-line user interface

  • Language: R;Perl

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: v1.05

  • Credit: CNRS, the ANR-12-BSV6-0017 ‘INFERNO’, the ANR-14-CE10-0005-03 ‘PiggyPack’ grants. PhD fellowship from the MENRT.

  • Input: -

  • Output: -

  • Contact: linda.sperling@i2bc.paris-saclay.fr

  • Collection: -

  • Maturity: -

Publications

  • ParTIES: a toolbox for Paramecium interspersed DNA elimination studies.
  • Denby Wilkes C, et al. ParTIES: a toolbox for Paramecium interspersed DNA elimination studies. ParTIES: a toolbox for Paramecium interspersed DNA elimination studies. 2016; 32:599-601. doi: 10.1093/bioinformatics/btv691
  • https://doi.org/10.1093/bioinformatics/btv691
  • PMID: 26589276
  • PMC: -

Download and documentation

< Back to DB search