Path2Models

Path2Models is a collection of taxonomically grouped models hosted in the Biomodels database. Path2Models project has automatically generated 140,000 mathematical models from the pathway databases, such as BioCarta, SABIO-RK, MetaCyc, KEGG, and PID.

Topic

Systems biology;Molecular interactions, pathways and networks;Genomics

Detail

  • Operation: Database search

  • Software interface: Database portal

  • Language: -

  • License: CC0 1.0 Universal (CC0 1.0) Public Domain Dedication

  • Cost: Free

  • Version name: -

  • Credit: European Union FP7 project UNICELLSYS, EU project BioPreDyn, the US National Institute of General Medical Sciences, the Federal Ministry of Education and Research (BMBF, Germany), National Genome Research Network (NGFN-Plus), Marie Curie International Outgoing Fellowship within FP7, the BBSRC, EMBL-EBI, the Innovative Medicines Initiative Joint Undertaking.

  • Input: -

  • Output: -

  • Contact: lenov@babraham.ac.uk

  • Collection: -

  • Maturity: Mature

Publications

  • Qualitative translation of relations from BioPAX to SBML qual
  • Büchel F, Wrzodek C, Mittag F, Dräger A, Eichner J, Rodriguez N, Le Novère N, Zell A. Qualitative translation of relations from BioPAX to SBML qual. Bioinformatics. 2012 Oct 15;28(20):2648-53. doi: 10.1093/bioinformatics/bts508. Epub 2012 Aug 24. PMID: 22923304; PMCID: PMC3467751.
  • https://doi.org/10.1093/bioinformatics/bts508
  • PMID: 22923304
  • PMC: PMC3467751
  • Path2Models: large-scale generation of computational models from biochemical pathway maps.
  • Büchel F, Rodriguez N, Swainston N, et al.: large-scale generation of computational models from biochemical pathway maps. BMC Syst Biol. 2013 Nov 1;7:116. doi: 10.1186/1752-0509-7-116. PMID: 24180668; PMCID: PMC4228421.
  • https://doi.org/10.1186/1752-0509-7-116
  • PMID: 24180668
  • PMC: PMC4228421

Download and documentation

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