PhenStat

PhenStat is an R package that addresses the challenge of reproducibility in animal phenotyping experiments within the biomedical community. The package offers a comprehensive suite of statistical methods tailored for high-throughput phenotyping pipelines, accommodating various experimental designs and specifically addressing temporal variation. It caters to small-scale researchers who require interactive tools for exploring data from extensive resources and large-scale users who need an automated statistical analysis pipeline. PhenStat guides users in selecting the most appropriate analysis methods for their data and allowing for future enhancements and customizations.

Topic

Statistics and probability;Genotype and phenotype

Detail

  • Operation: Statistical calculation

  • Software interface: Library

  • Language: R

  • License: Other

  • Cost: Free

  • Version name: 2.38.0

  • Credit: Wellcome Trust and National Institutes of Health.

  • Input: -

  • Output: -

  • Contact: Hamed Haselimashhadi hamedhm@ebi.ac.uk

  • Collection: -

  • Maturity: Stable

Publications

  • PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data.
  • Kurbatova N, et al. PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data. PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data. 2015; 10:e0131274. doi: 10.1371/journal.pone.0131274
  • https://doi.org/10.1371/journal.pone.0131274
  • PMID: 26147094
  • PMC: PMC4493137

Download and documentation


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