Phy-Mer

Novel alignment-free and reference-independent mitochondrial haplogroup classifier.

Topic

Genetics;Sequence analysis

Detail

  • Operation: Alignment

  • Software interface: Command-line user interface

  • Language: Python

  • License: -

  • Cost: -

  • Version name: -

  • Credit: This work was largely supported by institutional fund provided by Massachusetts Eye and Ear Infirmary (MEEI) for MEEI Bioinformatics Center (X.G.). It was also supported in part by the National Institutes of Health (U54-NS078059;-North American Mitochondrial Disease Consortium pilot award #NAMDC7407; to M.J.F. and X.G.; and U41-HG006834) and the United Mitochondrial Disease Foundation (UMDF) support for MSeqDR (https:--mseqdr.org). J.L., M.L., and D.C.W. were supported in part by the National Institutes of Health grant NS021328 (D.C.W.). MvO was supported in part by a grant from the Netherlands Genomic Initiative (NGI)-Netherlands Organization for Scientific Research (NWO) within the framework of the Forensic Genomics Consortium Netherlands (FGCN).

  • Input: -

  • Output: -

  • Contact: Daniel_navarro@meei.harvard.edu

  • Collection: -

  • Maturity: -

Publications

  • Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier.
  • Navarro-Gomez D, et al. Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier. Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier. 2015; 31:1310-2. doi: 10.1093/bioinformatics/btu825
  • https://doi.org/10.1093/bioinformatics/btu825
  • PMID: 25505086
  • PMC: PMC4393525

Download and documentation

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