PhylOligo

Identify contaminant or untargeted organism sequences in genome assemblies.

Topic

Genomics;Sequencing;Data quality management

Detail

  • Operation: Sequencing quality control

  • Software interface: Command-line user interface

  • Language: ;Identify contaminant or untargeted organism sequences in genome assemblies.;Command-line tool;Python

  • License: -

  • Cost: -

  • Version name: -

  • Credit: NoFundingPara

  • Input: -

  • Output: -

  • Contact: ludovic.mallet@inra.fr

  • Collection: -

  • Maturity: -

Publications

  • PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.
  • Mallet L, et al. PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies. PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies. 2017; 33:3283-3285. doi: 10.1093/bioinformatics/btx396
  • https://doi.org/10.1093/bioinformatics/btx396
  • PMID: 28637232
  • PMC: PMC5860033

Download and documentation

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