Phylo-VISTA

Phylo-VISTA is an interactive tool that visualizes and compares cross-species alignment data by organizing the complexity of visual presentation based on interspecies phylogenetic relationships. It supports rapid, user-guided interspecies comparison and leverages concepts from VISTA to aid navigation through large sequence datasets. Phylo-VISTA is highly flexible and powerful for visual data analysis of multiple sequence alignments.

Topic

Gene transcripts;Mapping;Transcription factors and regulatory sites;DNA;Sequence assembly

Detail

  • Operation: Pairwise sequence alignment;Multiple sequence alignment;Local alignment;Global alignment

  • Software interface: Web user interface

  • Language: Java

  • License: Other

  • Cost: Free for academic or non-profit research institutions to use for internal research purposes.

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Vista@lbl.gov

  • Collection: -

  • Maturity: Mature

Publications

  • Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.
  • Shah N, et al. Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. 2004; 20:636-43. doi: 10.1093/bioinformatics/btg459
  • https://doi.org/10.1093/bioinformatics/btg459
  • PMID: 15033870
  • PMC: -

Download and documentation

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