PhylochipAnalyzer

PhylochipAnalyzer is a Windows-program for the analysis of experiments with hierarchical probe-sets. It operates in two modes: first, the hierarchy of probes is defined interactively, second, the intensity data of a hybridized chip is loaded and analyzed according to the hierarchy. The program can export hierarchy trees to Newick-format and analyzed data to Excel. It contains a Delphi-script that makes it configurable with respect to different criteria for positive signals.

Topic

Probes;ChiP

Detail

  • Operation: Microarray data analysis;Analysis

  • Software interface: Graphical user interface

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  • Credit: AHT was supported by a Feodor Lynen Fellowship of the Alexander von Humboldt Foundation. Major support was provided by independent grants from the Marine Microbiology Initiative of the Gordon and Betty Moore Foundation to SJG and AZW, NSF IOS-0843119 (AZW), and NSF Microbial Observatory grants MCB-0237713 and OCE-0802004 (SJG).

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Publications

  • High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences.
  • Vergin KL, et al. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences. 2013; 7:1322-32. doi: 10.1038/ismej.2013.32
  • https://doi.org/10.1038/ismej.2013.32
  • PMID: 23466704
  • PMC: PMC3695298

Download and documentation

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