ProtocolNavigator

The software tool 'ProtocolNavigator' is designed to address the challenge of interpreting and assessing complex experimental methodologies and designs from written text, which is a major contributing factor to irreproducibility in biological research. It provides an open-source emulation-based tool for designing, documenting and reproducing biological experiments, which is biologist-friendly and platform-independent.

Topic

Simulation experiment;Proteins;Nucleic acids

Detail

  • Operation: Modelling and simulation

  • Software interface: Graphical user interface

  • Language: Python

  • License: GNU General Public License, version 2

  • Cost: Free

  • Version name: -

  • Credit: European Union Marie Curie International Outgoing Fellowship, Union for International Cancer Control Fellowship, the US National Institute of Health (NIH), Human Frontiers in Science Program, UK Engineering and Physical Sciences Research Council.

  • Input: -

  • Output: -

  • Contact: Imtiaz A. Khan wpciak@cf.ac.uk

  • Collection: -

  • Maturity: -

Publications

  • ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments.
  • Khan IA, et al. ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments. ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments. 2014; 30:3440-2. doi: 10.1093/bioinformatics/btu554
  • https://doi.org/10.1093/bioinformatics/btu554
  • PMID: 25150250
  • PMC: PMC4296150

Download and documentation

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