Protter

Protter is a tool to interactively visualize and integrate annotated features and to generate hypotheses with experimental proteomics data. The Protter also has a function to produce publication-quality protein illustrations.

Topic

Proteomics;Protein interactions;Protein folds and structural domains;Protein secondary structure;Protein binding sites

Detail

  • Operation: Transmembrane protein visualisation;Topology diagram drawing;GPCR prediction;MRM/SRM;Protein feature detection

  • Software interface: Web user interface

  • Language: Java

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.0

  • Credit: Swiss National Science Foundation.

  • Input: -

  • Output: -

  • Contact: protter@msb.biol.ethz.ch

  • Collection: -

  • Maturity: -

Publications

  • Protter: interactive protein feature visualization and integration with experimental proteomic data.
  • Omasits U, et al. Protter: interactive protein feature visualization and integration with experimental proteomic data. Protter: interactive protein feature visualization and integration with experimental proteomic data. 2014; 30:884-6. doi: 10.1093/bioinformatics/btt607
  • https://doi.org/10.1093/bioinformatics/btt607
  • PMID: 24162465
  • PMC: -

Download and documentation

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