PyBEL

PyBEL is a software tool designed for parsing, validating, converting, storing, querying, and visualizing networks encoded in Biological Expression Language (BEL). It is implemented in platform-independent, universal Python code and its source is distributed under the Apache 2.0 License. PyBEL enables the assembly of knowledge networks from biological relations across multiple modes and scales

Topic

Data integration and warehousing;Gene expression;Molecular interactions, pathways and networks

Detail

  • Operation: Formatting

  • Software interface: Library

  • Language: Python

  • License: MIT License

  • Cost: Free

  • Version name: v0.15.5

  • Credit: European Union-European Federation of Pharmaceutical Industries and Associations (EFPIA) Innovative Medicines Initiative Joint Undertaking under AETIONOMY, the European Unions Seventh Framework Programme, EFPIA companies.

  • Input: -

  • Output: -

  • Contact: charles.hoyt@scai.fraunhofer.de

  • Collection: -

  • Maturity: -

Publications

  • PyBEL: a computational framework for Biological Expression Language.
  • Hoyt CT, et al. PyBEL: a computational framework for Biological Expression Language. PyBEL: a computational framework for Biological Expression Language. 2018; 34:703-704. doi: 10.1093/bioinformatics/btx660
  • https://doi.org/10.1093/bioinformatics/btx660
  • PMID: 29048466
  • PMC: PMC5860616

Download and documentation

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