PySCeSToolbox

The PySCeSToolbox software tool is an extension to the PySCeS Python Simulator for Cellular Systems that includes tools for performing generalized supply-demand analysis, symbolic metabolic control analysis, and a framework for investigating the kinetic and thermodynamic aspects of enzyme-catalyzed reactions. These tools complement each other and can be used in conjunction to better understand higher level system behavior.

Topic

Molecular interactions, pathways and networks;Cell biology;Simulation experiment

Detail

  • Operation: Pathway or network analysis

  • Software interface: Command-line user interface

  • Language: Python

  • License: BSD 3-Clause "New" or "Revised" License

  • Cost: Free

  • Version name: 1.0.0

  • Credit: National Research Foundation of South Africa (NRF)

  • Input: -

  • Output: -

  • Contact: Johann M Rohwer jr@sun.ac.za

  • Collection: -

  • Maturity: -

Publications

  • PySCeSToolbox: a collection of metabolic pathway analysis tools.
  • Christensen CD, et al. PySCeSToolbox: a collection of metabolic pathway analysis tools. PySCeSToolbox: a collection of metabolic pathway analysis tools. 2018; 34:124-125. doi: 10.1093/bioinformatics/btx567
  • https://doi.org/10.1093/bioinformatics/btx567
  • PMID: 28968872
  • PMC: -

Download and documentation

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