Pybedtools

Pybedtools is a Python software library that provides an intuitive Python interface to manipulate and explore genomic datasets in various formats. The library extends the popular BEDTools genome arithmetic tools and enables the development of powerful scripts for complex genomic analyses.

Topic

Genomics

Detail

  • Operation: Read mapping

  • Software interface: Library

  • Language: Python

  • License: GNU General Public License, version 2

  • Cost: Free

  • Version name: 0.9.0

  • Credit: Intramural Program of the National Institute of Diabetes and Digestive and Kidney Diseases.

  • Input: -

  • Output: -

  • Contact: dalerr@niddk.nih.gov, arq5x@virginia.edu

  • Collection: -

  • Maturity: Stable

Publications

  • Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
  • Dale RK, et al. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. 2011; 27:3423-4. doi: 10.1093/bioinformatics/btr539
  • https://doi.org/10.1093/bioinformatics/btr539
  • PMID: 21949271
  • PMC: PMC3232365

Download and documentation


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