Pybedtools
Pybedtools is a Python software library that provides an intuitive Python interface to manipulate and explore genomic datasets in various formats. The library extends the popular BEDTools genome arithmetic tools and enables the development of powerful scripts for complex genomic analyses.
Topic
Genomics
Detail
Operation: Read mapping
Software interface: Library
Language: Python
License: GNU General Public License, version 2
Cost: Free
Version name: 0.9.0
Credit: Intramural Program of the National Institute of Diabetes and Digestive and Kidney Diseases.
Input: -
Output: -
Contact: dalerr@niddk.nih.gov, arq5x@virginia.edu
Collection: -
Maturity: Stable
Publications
- Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.
- Dale RK, et al. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. Pybedtools: a flexible Python library for manipulating genomic datasets and annotations. 2011; 27:3423-4. doi: 10.1093/bioinformatics/btr539
- https://doi.org/10.1093/bioinformatics/btr539
- PMID: 21949271
- PMC: PMC3232365
Download and documentation
Documentation: http://daler.github.io/pybedtools/
Home page: https://pypi.python.org/pypi/pybedtools
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