QSurface

QSurface is a tool for analyzing markers in transcriptome samples from cancer patients. The QSurface algorithm can identify lineage- and mutation-specific markers that are over-expressed. The data contains 13,646 mutations from 14 cancer types.

Topic

Systems biology;Human biology;Physiology;Oncology;Genetic variation

Detail

  • Operation: Genetic variation analysis

  • Software interface: Graphical user interface

  • Language: Java

  • License: -

  • Cost: Free

  • Version name: 1.0

  • Credit: The National Research Foundation of Korea (KRF), the Science Research Center Program, the Bio & Medical Technology Development Program, the Basic Science Research Program, the Korean government (MEST), the Sookmyung Women’s University BK21 Plus Scholarship.

  • Input: -

  • Output: -

  • Contact: Yourae Hong yurkan@naver.com, yoonsj@sookmyung.ac.kr

  • Collection: -

  • Maturity: -

Publications

  • QSurface: fast identification of surface expression markers in cancers.
  • Hong Y, Park C, Kim N, Cho J, Moon SU, Kim J, Jeong E, Yoon S. QSurface: fast identification of surface expression markers in cancers. BMC Syst Biol. 2018 Mar 19;12(Suppl 2):17. doi: 10.1186/s12918-018-0541-6. PMID: 29560830; PMCID: PMC5861488.
  • https://doi.org/10.1186/s12918-018-0541-6
  • PMID: 29560830
  • PMC: PMC5861488

Download and documentation

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