QuIN

The tool QuIN is a web-based application that allows the building and visualization of chromatin interaction networks, annotating networks with functional genomics and interaction datasets, querying network components, and prioritizing critical regulatory targets and their interactions. The software utilizes network theory approaches and is available on a web server as well as the source code on GitHub under the GPLV3 license.

Topic

Data visualisation;Molecular interactions, pathways and networks

Detail

  • Operation: Pathway or network visualisation;Annotation

  • Software interface: Web user interface

  • Language: Java

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Duygu Ucar duygu.ucar@jax.org

  • Collection: -

  • Maturity: -

Publications

  • CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets.
  • Schofield EC, et al. CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets. CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets. 2016; 32:2511-3. doi: 10.1093/bioinformatics/btw173
  • https://doi.org/10.1093/bioinformatics/btw173
  • PMID: 27153610
  • PMC: PMC4978926
  • QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.
  • Thibodeau A, et al. QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. 2016; 12:e1004809. doi: 10.1371/journal.pcbi.1004809
  • https://doi.org/10.1371/journal.pcbi.1004809
  • PMID: 27336171
  • PMC: -

Download and documentation

< Back to DB search