R453Plus1Toolbox
The R453Plus1Toolbox is an R/Bioconductor package for analyzing 454 sequencing data, which can be imported into R for advanced and customized analyses. It includes methods for quality assurance, annotation of detected variants, and a pipeline for detecting structural variants.
Topic
Sequencing;Genomics
Detail
Operation: Sequence analysis;Sequencing quality control
Software interface: Command-line user interface;Library
Language: R
License: GNU Lesser General Public License v3.0
Cost: Free
Version name: 1.48.0
Credit: Jose Carreras Foundation; European Leukemia Network of Excellence; COST Action BM0801 (EuGESMA).
Input: -
Output: -
Contact: h.klein@uni-muenster.de
Collection: -
Maturity: Mature
Publications
- R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data.
- Klein HU, et al. R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data. R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data. 2011; 27:1162-3. doi: 10.1093/bioinformatics/btr102
- https://doi.org/10.1093/bioinformatics/btr102
- PMID: 21349869
- PMC: -
Download and documentation
Source: http://bioconductor.org/packages/release/bioc/src/contrib/R453Plus1Toolbox_1.48.0.tar.gz
Documentation: http://bioconductor.org/packages/release/bioc/manuals/R453Plus1Toolbox/man/R453Plus1Toolbox.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/R453Plus1Toolbox.html
Links: http://bioconductor.org/packages/release/bioc/vignettes/R453Plus1Toolbox/inst/doc/vignette.pdf
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