RAmiRNA

RAmiRNA is a suite of standalone software designed to facilitate the development of prediction models for mature microRNAs (miRNAs) in relatively less studied organisms. The software uses support vector machine (SVM) learning to develop prediction models for miRNAs and generate training accuracy for quick estimation of prediction ability. RAmiRNA can be used to develop SVM-based models for predicting mature miRNAs in an organism or a group of organisms on a UNIX based local machine.

Topic

Functional, regulatory and non-coding RNA;RNA;Machine learning

Detail

  • Operation: Nucleic acid feature detection

  • Software interface: Command-line user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: Indian Institute of Information Technology

  • Input: -

  • Output: -

  • Contact: shiva@iiita.ac.in

  • Collection: -

  • Maturity: -

Publications

  • RAmiRNA: Software suite for generation of SVMbased prediction models of mature miRNAs.
  • Tyagi V and Prasad CS. RAmiRNA: Software suite for generation of SVMbased prediction models of mature miRNAs. RAmiRNA: Software suite for generation of SVMbased prediction models of mature miRNAs. 2012; 8:581-5. doi: 10.6026/97320630008581
  • https://doi.org/10.6026/97320630008581
  • PMID: 22829735
  • PMC: PMC3398785

Download and documentation

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