RSSALib

RSSALib (Rejection-based stochastic simulation algorithm) is a software tool to simulate biochemical reaction mechanisms with complex kinetic and time delays. The RSSALib uses a Rejection-based stochastic simulation algorithm. The package includes an API and a GUI.

Topic

Mathematics;Enzymes;Bioinformatics

Detail

  • Operation: Modelling and simulation;Simulation analysis;Enzyme kinetics calculation

  • Software interface: Command-line user interface;Graphical user interface

  • Language: Java

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: -

  • Credit: Academy of Finland

  • Input: -

  • Output: -

  • Contact: Vo Hong Thanh thanh.vo@aalto.fi

  • Collection: -

  • Maturity: -

Publications

  • RSSALib: a library for stochastic simulation of complex biochemical reactions
  • Thanh VH. RSSALib: a library for stochastic simulation of complex biochemical reactions. Bioinformatics. 2020 Sep 15;36(18):4825-4826. doi: 10.1093/bioinformatics/btaa602. PMID: 32614393; PMCID: PMC7750935.
  • https://doi.org/10.1093/bioinformatics/btaa602
  • PMID: 32614393
  • PMC: PMC7750935

Download and documentation

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