RTCGAToolbox
RTCGAToolbox is an open-source, R-based software tool designed to streamline the management and preparation of data for further analysis from large-scale projects like The Cancer Genome Atlas (TCGA). Recognizing the challenges researchers face in handling TCGA's extensive pre-processed data, available through platforms like the Firehose project, RTCGAToolbox offers an efficient solution for downloading, managing, and preparing this data for subsequent analytical steps.
Topic
Genomics;Data management
Detail
Operation: Query and retrieval
Software interface: Command-line user interface,Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 2.32.1
Credit: National Institutes of Health.
Input: -
Output: -
Contact: Marcel Ramos marcel.ramos@roswellpark.org
Collection: -
Maturity: Stable
Publications
- RTCGAToolbox: a new tool for exporting TCGA Firehose data.
- Samur MK. RTCGAToolbox: a new tool for exporting TCGA Firehose data. RTCGAToolbox: a new tool for exporting TCGA Firehose data. 2014; 9:e106397. doi: 10.1371/journal.pone.0106397
- https://doi.org/10.1371/journal.pone.0106397
- PMID: 25181531
- PMC: PMC4152273
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/RTCGAToolbox_2.32.1.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/RTCGAToolbox/man/RTCGAToolbox.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/RTCGAToolbox.html
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