RTK

RTK is a software package for analyzing large microbiomics datasets, allowing for efficient rarefaction and estimation of diversity, richness, and evenness. Operating at least 7x faster than existing solutions while requiring 10x less memory, this software provides a practical and user-friendly solution for data analysis.

Topic

Microbiology;Microbial ecology;Population genetics

Detail

Operation: Rarefaction
Software interface: Library
Language: R
License: GNU General Public License v>=2
Cost: Free
Version name: 0.2.6.1
Credit: The European Union’s Horizon 2020 program under the Marie Skłodowska-Curie grant, MetaCardis, EMBL.
Input: -
Output: -
Contact: Paul Saary rtk@paulsaary.de
Collection: -
Maturity: Emerging

Publications

RTK: efficient rarefaction analysis of large datasets.
Saary P, et al. RTK: efficient rarefaction analysis of large datasets. RTK: efficient rarefaction analysis of large datasets. 2017; 33:2594-2595. doi: 10.1093/bioinformatics/btx206
https://doi.org/10.1093/bioinformatics/btx206
PMID: 28398468
PMC: PMC5870771

Download and documentation

Source: https://cran.r-project.org/src/contrib/rtk_0.2.6.1.tar.gz
Documentation: https://cran.r-project.org/web/packages/rtk/rtk.pdf
Home page: https://cran.r-project.org/web/packages/rtk/index.html
Links: https://cran.r-project.org/web/packages/rtk/readme/README.html

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