RaptorX-Angle

RaptorX-Angle is a software tool to predict backbone dihedral angles of proteins. The RaptorX-Angle algorithm uses clustering and deep learning, residual neural network (ResNet).

Topic

Machine learning;Protein structure

Detail

  • Operation: Protein geometry calculation;Protein structure prediction;Clustering

  • Software interface: Graphical user interface

  • Language: Python

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: The National Key Research and Development Program of China, the National Key Basic Research Project of China, the National Natural Science Foundation of China, China Scholarship Council.

  • Input: FASTA

  • Output: -

  • Contact: Yujuan Gao ygao@ttic.edu

  • Collection: -

  • Maturity: -

Publications

  • RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning.
  • Gao Y, Wang S, Deng M, Xu J. RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning. BMC Bioinformatics. 2018 May 8;19(Suppl 4):100. doi: 10.1186/s12859-018-2065-x. PMID: 29745828; PMCID: PMC5998898.
  • https://doi.org/10.1186/s12859-018-2065-x
  • PMID: 29745828
  • PMC: PMC5998898

Download and documentation

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